Transcript: lnc-ATAD2B-3:2

Basic information

LNCipedia transcript ID: lnc-ATAD2B-3:2 
LNCipedia gene ID: lnc-ATAD2B-3
Ensembl Gene ID: ENSG00000235497
Ensembl Transcript ID: ENST00000430051
Location (hg38): chr2:23375364-23381255
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003236; ENST00000430051; ENST00000430051.1; AC012506.4-001; OTTHUMT00000324283.1; NONHSAT069542
Alternative gene names: XLOC_002022; linc-APOB-9; ENSG00000235497; AC012506.4; ENSG00000235497.1; OTTHUMG00000151891.1; ENSG00000235497.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.1693 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATAD2B-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC011239.1.1-1:2
3.1 lnc-AC011239.1.1-1:2
4.0 lnc-AC011239.1.1-1:2
4.1 lnc-AC011239.1.1-1:2
5.0 lnc-AC011239.1.1-1:2
5.1 lnc-DNAJC27-48:2
5.2 lnc-ATAD2B-3:2