Transcript: lnc-ATAD5-2:1

Basic information

LNCipedia transcript ID: lnc-ATAD5-2:1 
LNCipedia gene ID: lnc-ATAD5-2
Ensembl Gene ID: ENSG00000263603
Ensembl Transcript ID: ENST00000581019
Location (hg38): chr17:30729469-30730391
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581019.1; CTD-2349P21.5-001; OTTHUMT00000444266.1; NONHSAT052818
Alternative gene names: ENSG00000263603.1; CTD-2349P21.5; OTTHUMG00000178993.2; AC127024.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.8585 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATAD5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATAD5-2:1
4.0 lnc-ATAD5-2:1
4.1 lnc-ATAD5-2:1
5.0 lnc-ATAD5-2:1
5.1 lnc-NSRP1-18:1
5.2 lnc-ATAD5-2:1