Transcript: lnc-ATAD5-9:17

Basic information

LNCipedia transcript ID: lnc-ATAD5-9:17 
LNCipedia gene ID: lnc-ATAD5-9
Location (hg38): chr17:30731706-30758333
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 884 bp
Exons: 6
Sources: Broad Institute
Alternative transcript names: TCONS_00025103
Alternative gene names: XLOC_012162; linc-ATAD5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 176.1587 coding 
CPAT coding probability 41.17% coding 
Bazzini small ORFs 1 coding 
orfFrame8.300562893
seqAAMSHRNSRTNIKRKTFKVDDMLSKVEKMKGEQESHRKRGIQSGSVAHTYNPSYLGG
covF1Prop0.132075472

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATAD5-9:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATAD5-1:3
3.1 lnc-ATAD5-3:3
4.0 lnc-ATAD5-3:3
4.1 lnc-ATAD5-3:3
5.0 lnc-ATAD5-3:3
5.1 lnc-NSRP1-19:17
5.2 lnc-ATAD5-9:17