Transcript: lnc-ATAD5-9:19

Basic information

LNCipedia transcript ID: lnc-ATAD5-9:19 
LNCipedia gene ID: lnc-ATAD5-9
Location (hg38): chr17:30732518-30743234
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025888; NONHSAT052825
Alternative gene names: XLOC_012162; linc-ATAD5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.277 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATAD5-9:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATAD5-1:4
3.1 lnc-ATAD5-3:4
4.0 lnc-ATAD5-3:4
4.1 lnc-ATAD5-3:4
5.0 lnc-ATAD5-3:4
5.1 lnc-NSRP1-19:19
5.2 lnc-ATAD5-9:19