Transcript: lnc-ATG10-2:2

Basic information

LNCipedia transcript ID: lnc-ATG10-2:2 
LNCipedia gene ID: lnc-ATG10-2
Location (hg38): chr5:82382945-82386516
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2511 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009252; NONHSAT102489
Alternative gene names: XLOC_004445; linc-XRCC4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.6825 non-coding 
CPAT coding probability 13.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG10-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG10-2:2
3.1 lnc-ATG10-2:2
4.0 lnc-ATG10-2:2
4.1 lnc-ATG10-2:2
5.0 lnc-ATG10-2:2
5.1 lnc-MSH3-20:2
5.2 lnc-ATG10-2:2