Transcript: lnc-ATG12-5:3

Basic information

LNCipedia transcript ID: lnc-ATG12-5:3 
LNCipedia gene ID: lnc-ATG12-5
Location (hg38): chr5:116083807-116085376
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1570 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000271918.1|ENST00000606662.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -104.9176 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG12-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATG12-5:3
5.0 lnc-ATG12-5:3
5.1 lnc-LOX-93:2
5.2 lnc-ATG12-5:3