Transcript: lnc-ATG16L2-1:1

Basic information

LNCipedia transcript ID: lnc-ATG16L2-1:1 
LNCipedia gene ID: lnc-ATG16L2-1
Location (hg38): chr11:72755329-72766293
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 368 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000538111.1; STARD10-AS1-001; OTTHUMT00000397275.1; NONHSAT022795
Alternative gene names: ENSG00000255709.1; STARD10-AS1; OTTHUMG00000167955.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.0181 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG16L2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATG16L2-1:1
4.0 lnc-ATG16L2-1:1
4.1 lnc-ATG16L2-1:1
5.0 lnc-ATG16L2-1:1
5.1 lnc-TCIRG1-103:1
5.2 lnc-ATG16L2-1:1