Transcript: lnc-ATG2B-12:2

Basic information

LNCipedia transcript ID: lnc-ATG2B-12:2 
LNCipedia gene ID: lnc-ATG2B-12
Ensembl Gene ID: ENSG00000258729
Ensembl Transcript ID: ENST00000554299
Location (hg38): chr14:96275046-96276723
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1678 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554299.1
Alternative gene names: ENSG00000258729.2; RP11-404P21.6; AL355102.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.889 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-404P21.6.1-12:2
4.1 lnc-RP11-404P21.6.1-12:2
5.0 lnc-RP11-404P21.6.1-12:2
5.1 lnc-TCL1A-12:2
5.2 lnc-ATG2B-12:2