Transcript: lnc-ATG2B-1:2

Basic information

LNCipedia transcript ID: lnc-ATG2B-1:2 
LNCipedia gene ID: lnc-ATG2B-1
Ensembl Gene ID: ENSG00000258793
Ensembl Transcript ID: ENST00000553638
Location (hg38): chr14:96259411-96268624
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553638.1; RP11-404P21.3-001; OTTHUMT00000413267.1; NONHSAT039514
Alternative gene names: ENSG00000258793.1; RP11-404P21.3; OTTHUMG00000171397.1; AL355102.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.7248 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-1:2 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404P21.6.1-1:1
4.0 lnc-RP11-404P21.6.1-1:1
4.1 lnc-RP11-404P21.6.1-1:1
5.0 lnc-RP11-404P21.6.1-1:1
5.1 lnc-TCL1A-4:1
5.2 lnc-ATG2B-1:2