Transcript: lnc-ATG2B-20:3

Basic information

LNCipedia transcript ID: lnc-ATG2B-20:3 
LNCipedia gene ID: lnc-ATG2B-20
Location (hg38): chr14:97005882-97007780
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00023164
Alternative gene names: XLOC_011115; linc-ATG2B-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.31 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-20:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG2B-1:1
3.1 lnc-ATG2B-3:1
4.0 lnc-ATG2B-3:1
4.1 lnc-ATG2B-3:1
5.0 lnc-ATG2B-3:1
5.1 lnc-TCL1A-24:3
5.2 lnc-ATG2B-20:3