Transcript: lnc-ATG2B-21:1

Basic information

LNCipedia transcript ID: lnc-ATG2B-21:1 
LNCipedia gene ID: lnc-ATG2B-21
Ensembl Gene ID: ENSG00000259026
Ensembl Transcript ID: ENST00000556773
Location (hg38): chr14:97117785-97119247
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556773; ENST00000556773.1; RP11-907D1.1-002; OTTHUMT00000413537.1; NONHSAT039563
Alternative gene names: ENSG00000259026; RP11-907D1.1; ENSG00000259026.1; OTTHUMG00000171462.1; AL049833.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.4943 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-204N11.1.1-3:1
3.1 lnc-RP11-204N11.1.1-4:1
4.0 lnc-RP11-204N11.1.1-4:1
4.1 lnc-RP11-204N11.1.1-4:1
5.0 lnc-RP11-204N11.1.1-4:1
5.1 lnc-TCL1A-25:1
5.2 lnc-ATG2B-21:1