Transcript: lnc-ATG4C-1:1

Basic information

LNCipedia transcript ID: lnc-ATG4C-1:1 
LNCipedia gene ID: lnc-ATG4C-1
Ensembl Gene ID: ENSG00000234318
Ensembl Transcript ID: ENST00000450811
Location (hg38): chr1:62896009-62901639
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000215; ENST00000450811; ENST00000450811.1; RP4-771M4.3-001; OTTHUMT00000127843.1; NONHSAT003645
Alternative gene names: XLOC_000229; linc-FOXD3-5; ENSG00000234318; RP4-771M4.3; ENSG00000234318.1; OTTHUMG00000057525.1; AC099794.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -322.3352 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG4C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG4C-1:1
3.1 lnc-ATG4C-1:1
4.0 lnc-ATG4C-1:1
4.1 lnc-ATG4C-1:1
5.0 lnc-ATG4C-1:1
5.1 lnc-ATG4C-1:1
5.2 lnc-ATG4C-1:1