Transcript: lnc-ATG4C-2:1

Basic information

LNCipedia transcript ID: lnc-ATG4C-2:1 
LNCipedia gene ID: lnc-ATG4C-2
Ensembl Gene ID: ENSG00000235545
Ensembl Transcript ID: ENST00000453229
Location (hg38): chr1:62688482-62710694
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1228 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000214; ENST00000453229.1; RP11-230B22.1-001; OTTHUMT00000025322.1; NONHSAT003639
Alternative gene names: XLOC_000228; linc-ATG4C; ENSG00000235545.1; RP11-230B22.1; OTTHUMG00000009136.1; AC103923.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.7917 non-coding 
CPAT coding probability 17.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG4C-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG4C-2:1
3.1 lnc-ATG4C-2:1
4.0 lnc-ATG4C-2:1
4.1 lnc-ATG4C-2:1
5.0 lnc-ATG4C-2:1
5.1 lnc-ATG4C-2:1
5.2 lnc-ATG4C-2:1