Transcript: lnc-ATG9B-2:5

Basic information

LNCipedia transcript ID: lnc-ATG9B-2:5 
LNCipedia gene ID: lnc-ATG9B-2
Location (hg38): chr7:151020918-151023516
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 646 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000473134.1; ATG9B-008; OTTHUMT00000351567.1
Alternative gene names: ENSG00000181652.11; ATG9B; OTTHUMG00000158634.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.4488 non-coding 
CPAT coding probability 9.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG9B-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK5-2:7
4.0 lnc-CDK5-2:7
4.1 lnc-CDK5-2:7
5.0 lnc-CDK5-2:7
5.1 lnc-KMT2C-37:5
5.2 lnc-ATG9B-2:5