Transcript: lnc-ATL1-1:1

Basic information

LNCipedia transcript ID: lnc-ATL1-1:1 
LNCipedia gene ID: lnc-ATL1-1
Location (hg38): chr14:50491612-50492571
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 333 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000553475; ENST00000553475.1; RP11-406H23.3-001; OTTHUMT00000410891.1; NONHSAT036803
Alternative gene names: ENSG00000258528; RP11-406H23.3; ENSG00000258528.1; OTTHUMG00000170890.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATL1-1:1
3.1 lnc-ATL1-1:1
4.0 lnc-ATL1-1:1
4.1 lnc-ATL1-1:1
5.0 lnc-ATL1-1:1
5.1 lnc-AP5M1-97:1
5.2 lnc-ATL1-1:1