Transcript: lnc-ATL2-1:12

Basic information

LNCipedia transcript ID: lnc-ATL2-1:12 
LNCipedia gene ID: lnc-ATL2-1
RefSeq ID: NR_110259
Location (hg38): chr2:38458637-38515740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1133 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110259.1
Alternative gene names: LOC101929596


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 31.4458 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATL2-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MAP4K3-29:3
5.1 lnc-MAP4K3-29:3
5.2 lnc-ATL2-1:12