Transcript: lnc-ATL2-1:2

Basic information

LNCipedia transcript ID: lnc-ATL2-1:2 
LNCipedia gene ID: lnc-ATL2-1
Ensembl Gene ID: ENSG00000231367
Ensembl Transcript ID: ENST00000421463
Location (hg38): chr2:38458643-38483093
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421463; ENST00000421463.1; AC016995.3-005; OTTHUMT00000331177.1; NONHSAT070183; ENST00000421463.5
Alternative gene names: ENSG00000231367; AC016995.3; ENSG00000231367.1; OTTHUMG00000153431.1; ENSG00000231367.5; AC011247.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8899 non-coding 
CPAT coding probability 12.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATL2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATL2-2:2
3.1 lnc-ATL2-1:2
4.0 lnc-ATL2-1:2
4.1 lnc-ATL2-1:2
5.0 lnc-ATL2-1:2
5.1 lnc-MAP4K3-29:9
5.2 lnc-ATL2-1:2