Transcript: lnc-ATM-1:3

Basic information

LNCipedia transcript ID: lnc-ATM-1:3 
LNCipedia gene ID: lnc-ATM-1
Location (hg38): chr11:108499429-108502885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1727 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT024031; FPKM1_group_5275_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.1005 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATM-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATM-1:3
4.0 lnc-ATM-1:3
4.1 lnc-ATM-1:3
5.0 lnc-ATM-1:3
5.1 lnc-ZC3H12C-12:2
5.2 lnc-ATM-1:3