Transcript: lnc-ATMIN-3:2

Basic information

LNCipedia transcript ID: lnc-ATMIN-3:2 
LNCipedia gene ID: lnc-ATMIN-3
Ensembl Gene ID: ENSG00000261838
Ensembl Transcript ID: ENST00000563072
Location (hg38): chr16:81071998-81076598
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 408 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563072.1; RP11-303E16.6-002; OTTHUMT00000432152.1; NONHSAT143936
Alternative gene names: ENSG00000261838.1; RP11-303E16.6; OTTHUMG00000176472.1; ENSG00000261838.5; AC092718.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.7375 non-coding 
CPAT coding probability 7.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATMIN-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATMIN-3:2
4.0 lnc-ATMIN-3:2
4.1 lnc-ATMIN-3:2
5.0 lnc-ATMIN-3:2
5.1 lnc-CRISPLD2-71:2
5.2 lnc-ATMIN-3:2