Transcript: lnc-ATMIN-4:1

Basic information

LNCipedia transcript ID: lnc-ATMIN-4:1 
LNCipedia gene ID: lnc-ATMIN-4
Location (hg38): chr16:81077319-81078850
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1077 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000501068; TCONS_00024295
Alternative gene names: ENSG00000245059; XLOC_011800; linc-BCMO1; AC092718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.4078 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATMIN-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATMIN-1:1
3.1 lnc-ATMIN-4:1
4.0 lnc-ATMIN-4:1
4.1 lnc-ATMIN-4:1
5.0 lnc-ATMIN-4:1
5.1 lnc-CRISPLD2-70:1
5.2 lnc-ATMIN-4:1