Transcript: lnc-ATP11A-2:4

Basic information

LNCipedia transcript ID: lnc-ATP11A-2:4 
LNCipedia gene ID: lnc-ATP11A-2
Location (hg38): chr13:112588217-112598881
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10665 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000016350.1|ENCT00000116334.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 27.8177 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP11A-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C13orf35-2:4
5.0 lnc-C13orf35-2:4
5.1 lnc-SPACA7-6:4
5.2 lnc-ATP11A-2:4