Transcript: lnc-ATP13A3-1:1

Basic information

LNCipedia transcript ID: lnc-ATP13A3-1:1 
LNCipedia gene ID: lnc-ATP13A3-1
Location (hg38): chr3:194496324-194501503
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2962 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000455557.1; AC108676.1-001; OTTHUMT00000342807.1; NONHSAT094095
Alternative gene names: ENSG00000244675.1; AC108676.1; OTTHUMG00000156035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1452 non-coding 
CPAT coding probability 11.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP13A3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP13A3-1:1
4.0 lnc-ATP13A3-1:1
4.1 lnc-ATP13A3-1:1
5.0 lnc-ATP13A3-1:1
5.1 lnc-ATP13A3-1:1
5.2 lnc-ATP13A3-1:1