Transcript: lnc-ATP23-89:1

Basic information

LNCipedia transcript ID: lnc-ATP23-89:1 
LNCipedia gene ID: lnc-ATP23-89
Ensembl Gene ID: ENSG00000258231
Ensembl Transcript ID: ENST00000546977
Location (hg38): chr12:58544124-58813060
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1447 bp
Exons: 8
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546977.5
Alternative gene names: ENSG00000258231.5; RP11-362K2.2; AC020637.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.1449 non-coding 
CPAT coding probability 13.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP23-89:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-362K2.2.1-3:2
4.1 lnc-RP11-362K2.2.1-3:2
5.0 lnc-RP11-362K2.2.1-3:2
5.1 lnc-CDK2-89:1
5.2 lnc-ATP23-89:1