Transcript: lnc-ATP23-89:9

Basic information

LNCipedia transcript ID: lnc-ATP23-89:9 
LNCipedia gene ID: lnc-ATP23-89
Location (hg38): chr12:58805945-58812647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020449; NONHSAT029032
Alternative gene names: XLOC_009781; linc-SLC16A7-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.5741 non-coding 
CPAT coding probability 13.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP23-89:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A7-3:2
3.1 lnc-SLC16A7-3:2
4.0 lnc-RP11-362K2.2.1-3:9
4.1 lnc-RP11-362K2.2.1-3:9
5.0 lnc-RP11-362K2.2.1-3:9
5.1 lnc-CDK2-89:9
5.2 lnc-ATP23-89:9