Transcript: lnc-ATP2B1-5:1

Basic information

LNCipedia transcript ID: lnc-ATP2B1-5:1 
LNCipedia gene ID: lnc-ATP2B1-5
Location (hg38): chr12:89730508-89733801
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3294 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000012786.1|FTMT24600004355.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.2267 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP2B1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP2B1-5:1
5.0 lnc-ATP2B1-5:1
5.1 lnc-CCER1-12:1
5.2 lnc-ATP2B1-5:1