Transcript: lnc-ATP5ME-1:17

Basic information

LNCipedia transcript ID: lnc-ATP5ME-1:17 
LNCipedia gene ID: lnc-ATP5ME-1
Ensembl Gene ID: ENSG00000242686
Ensembl Transcript ID: ENST00000468356
Location (hg38): chr4:653059-656213
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2120 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000468356.3
Alternative gene names: ENSG00000242686.4; RP11-1191J2.2; AC107464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.3558 non-coding 
CPAT coding probability 54.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP5ME-1:17 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATP5I-1:8
4.1 lnc-ATP5I-1:8
5.0 lnc-ATP5I-1:8
5.1 lnc-PSAPL1-115:17
5.2 lnc-ATP5ME-1:17