Transcript: lnc-ATP5ME-1:18

Basic information

LNCipedia transcript ID: lnc-ATP5ME-1:18 
LNCipedia gene ID: lnc-ATP5ME-1
Location (hg38): chr4:653223-655645
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1388 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000468356.1; RP11-1191J2.2-001; OTTHUMT00000358106.1; NONHSAT094588
Alternative gene names: ENSG00000242686.1; RP11-1191J2.2; OTTHUMG00000159908.1; ENSG00000242686.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3558 non-coding 
CPAT coding probability 87.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP5ME-1:18 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5I-1:1
4.0 lnc-ATP5I-1:1
4.1 lnc-ATP5I-1:1
5.0 lnc-ATP5I-1:1
5.1 lnc-PSAPL1-115:18
5.2 lnc-ATP5ME-1:18