Transcript: lnc-ATP6AP2-2:1

Basic information

LNCipedia transcript ID: lnc-ATP6AP2-2:1 
LNCipedia gene ID: lnc-ATP6AP2-2
Location (hg38): chrX:40262878-40281420
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017417; NONHSAT136686
Alternative gene names: XLOC_007960; linc-ATP6AP2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.8217 non-coding 
CPAT coding probability 11.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6AP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6AP2-1:1
3.1 lnc-ATP6AP2-2:1
4.0 lnc-ATP6AP2-2:1
4.1 lnc-ATP6AP2-2:1
5.0 lnc-ATP6AP2-2:1
5.1 lnc-CHST7-76:1
5.2 lnc-ATP6AP2-2:1