Transcript: lnc-ATP6AP2-2:3

Basic information

LNCipedia transcript ID: lnc-ATP6AP2-2:3 
LNCipedia gene ID: lnc-ATP6AP2-2
Ensembl Gene ID: ENSG00000236393
Ensembl Transcript ID: ENST00000447570
Location (hg38): chrX:40262966-40267222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 707 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016978; ENST00000447570; ENST00000447570.1; RP11-320G24.1-002; OTTHUMT00000080722.1; NONHSAT136688
Alternative gene names: XLOC_007960; linc-ATP6AP2-1; ENSG00000236393; RP11-320G24.1; ENSG00000236393.1; OTTHUMG00000033140.1; AC091806.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.8217 non-coding 
CPAT coding probability 11.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6AP2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6AP2-1:3
3.1 lnc-ATP6AP2-2:3
4.0 lnc-ATP6AP2-2:3
4.1 lnc-ATP6AP2-2:3
5.0 lnc-ATP6AP2-2:3
5.1 lnc-CHST7-76:4
5.2 lnc-ATP6AP2-2:3