Transcript: lnc-ATP6AP2-2:4

Basic information

LNCipedia transcript ID: lnc-ATP6AP2-2:4 
LNCipedia gene ID: lnc-ATP6AP2-2
RefSeq ID: NR_110386
Location (hg38): chrX:40262917-40287721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3001 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT136687; NR_110386; NR_110386.1
Alternative gene names: LOC101927476


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.6797 non-coding 
CPAT coding probability 10.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6AP2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6AP2-2:4
4.0 lnc-ATP6AP2-2:4
4.1 lnc-ATP6AP2-2:4
5.0 lnc-ATP6AP2-2:4
5.1 lnc-CHST7-76:3
5.2 lnc-ATP6AP2-2:4