Transcript: lnc-ATP6AP2-5:1

Basic information

LNCipedia transcript ID: lnc-ATP6AP2-5:1 
LNCipedia gene ID: lnc-ATP6AP2-5
Location (hg38): chrX:39937303-39938440
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 514 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017156; NONHSAT136681
Alternative gene names: XLOC_007958; linc-ATP6AP2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -592.7949 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6AP2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6AP2-4:1
3.1 lnc-ATP6AP2-5:1
4.0 lnc-ATP6AP2-5:1
4.1 lnc-ATP6AP2-5:1
5.0 lnc-ATP6AP2-5:1
5.1 lnc-CHST7-82:1
5.2 lnc-ATP6AP2-5:1