Transcript: lnc-ATP6V0E2-1:1

Basic information

LNCipedia transcript ID: lnc-ATP6V0E2-1:1 
LNCipedia gene ID: lnc-ATP6V0E2-1
Ensembl Gene ID: ENSG00000260555
Ensembl Transcript ID: ENST00000565102
Location (hg38): chr7:150000752-150005124
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3044 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502920; TCONS_00013093; ENST00000565102.1; RP11-728K20.2-001; OTTHUMT00000422262.1; NONHSAT124085
Alternative gene names: ENSG00000249583; XLOC_006289; linc-LRRC61-2; ENSG00000260555.1; RP11-728K20.2; OTTHUMG00000173149.1; AC092681.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7567 non-coding 
CPAT coding probability 12.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V0E2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V0E2-1:1
3.1 lnc-ATP6V0E2-1:1
4.0 lnc-ATP6V0E2-1:1
4.1 lnc-ATP6V0E2-1:1
5.0 lnc-ATP6V0E2-1:1
5.1 lnc-ATP6V0E2-10:1
5.2 lnc-ATP6V0E2-1:1