Transcript: lnc-ATP6V1D-2:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1D-2:1 
LNCipedia gene ID: lnc-ATP6V1D-2
Ensembl Gene ID: ENSG00000258490
Ensembl Transcript ID: ENST00000555850
Location (hg38): chr14:66969038-66969816
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 514 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555850.1; RP11-862P13.1-001; OTTHUMT00000412389.1; NONHSAT037428
Alternative gene names: ENSG00000258490.1; RP11-862P13.1; OTTHUMG00000171219.1; AL049835.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -402.8696 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1D-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V1D-2:1
4.0 lnc-ATP6V1D-2:1
4.1 lnc-ATP6V1D-2:1
5.0 lnc-ATP6V1D-2:1
5.1 lnc-DHRS7-72:1
5.2 lnc-ATP6V1D-2:1