Transcript: lnc-ATP6V1D-8:8

Basic information

LNCipedia transcript ID: lnc-ATP6V1D-8:8 
LNCipedia gene ID: lnc-ATP6V1D-8
Ensembl Gene ID: ENSG00000258561
Ensembl Transcript ID: ENST00000555377
Location (hg38): chr14:66494644-66496334
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 286 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555377; ENST00000555377.1; RP11-72M17.1-003; OTTHUMT00000412210.1; NONHSAT037424
Alternative gene names: ENSG00000258561; RP11-72M17.1; ENSG00000258561.1; OTTHUMG00000171191.1; AL359232.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.8135 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1D-8:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2014B16.3.1-2:2
3.1 lnc-CTD-2014B16.3.1-2:2
4.0 lnc-CTD-2014B16.3.1-2:2
4.1 lnc-CTD-2014B16.3.1-2:2
5.0 lnc-CTD-2014B16.3.1-2:2
5.1 lnc-DHRS7-68:8
5.2 lnc-ATP6V1D-8:8