Transcript: lnc-ATP6V1E1-1:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1E1-1:1 
LNCipedia gene ID: lnc-ATP6V1E1-1
Ensembl Gene ID: ENSG00000236754
Ensembl Transcript ID: ENST00000443935
Location (hg38): chr22:17580157-17589192
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1838 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443935.1; AC004019.13-001; OTTHUMT00000316225.1; NONHSAT083218; ENST00000443935.5
Alternative gene names: ENSG00000236754.1; AC004019.13; OTTHUMG00000150092.1; ENSG00000236754.5; AC007666.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 185.457 coding 
CPAT coding probability 31.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP6V1E1-1:1 yes no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V1E1-1:1
4.0 lnc-ATP6V1E1-1:1
4.1 lnc-ATP6V1E1-1:1
5.0 lnc-ATP6V1E1-1:1
5.1 lnc-RTN4R-61:1
5.2 lnc-ATP6V1E1-1:1