Transcript: lnc-ATP6V1E1-1:2

Basic information

LNCipedia transcript ID: lnc-ATP6V1E1-1:2 
LNCipedia gene ID: lnc-ATP6V1E1-1
Ensembl Gene ID: ENSG00000236754
Ensembl Transcript ID: ENST00000611039
Location (hg38): chr22:17580314-17588018
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 507 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611039.1
Alternative gene names: ENSG00000236754.5; AC004019.13; AC007666.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 185.457 coding 
CPAT coding probability 52.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP6V1E1-1:2 yes no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATP6V1E1-1:2
4.1 lnc-ATP6V1E1-1:2
5.0 lnc-ATP6V1E1-1:2
5.1 lnc-RTN4R-61:2
5.2 lnc-ATP6V1E1-1:2