Transcript: lnc-ATP6V1G3-2:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-2:1 
LNCipedia gene ID: lnc-ATP6V1G3-2
Ensembl Gene ID: ENSG00000261573
Ensembl Transcript ID: ENST00000566394
Location (hg38): chr1:198657553-198667061
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 416 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566394.1; RP11-553K8.5-001; OTTHUMT00000086823.1; NONHSAT008646
Alternative gene names: ENSG00000261573.1; RP11-553K8.5; OTTHUMG00000035703.1; AL157402.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.7158 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V1G3-2:1
4.0 lnc-ATP6V1G3-2:1
4.1 lnc-ATP6V1G3-2:1
5.0 lnc-ATP6V1G3-2:1
5.1 lnc-MYOG-73:1
5.2 lnc-ATP6V1G3-2:1