Transcript: lnc-ATP8A1-1:3

Basic information

LNCipedia transcript ID: lnc-ATP8A1-1:3 
LNCipedia gene ID: lnc-ATP8A1-1
Ensembl Gene ID: ENSG00000250781
Ensembl Transcript ID: ENST00000503321
Location (hg38): chr4:42281830-42391233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007753; ENST00000503321.1; RP11-63A11.1-002; OTTHUMT00000363527.1; NONHSAT096191
Alternative gene names: XLOC_003939; linc-BEND4; ENSG00000250781.1; RP11-63A11.1; OTTHUMG00000161041.1; AC024022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0335 non-coding 
CPAT coding probability 5.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP8A1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP8A1-1:3
3.1 lnc-ATP8A1-1:3
4.0 lnc-ATP8A1-1:3
4.1 lnc-ATP8A1-1:3
5.0 lnc-ATP8A1-1:3
5.1 lnc-GABRA4-19:3
5.2 lnc-ATP8A1-1:3