Transcript: lnc-ATRIP-9:1

Basic information

LNCipedia transcript ID: lnc-ATRIP-9:1 
LNCipedia gene ID: lnc-ATRIP-9
Location (hg38): chr3:48609741-48614606
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4866 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000060061.1|ENCT00000288692.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 39.0551 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATRIP-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TREX1-9:1
5.0 lnc-TREX1-9:1
5.1 lnc-CCDC36-25:1
5.2 lnc-ATRIP-9:1