Transcript: lnc-ATXN10-4:1

Basic information

LNCipedia transcript ID: lnc-ATXN10-4:1 
LNCipedia gene ID: lnc-ATXN10-4
Location (hg38): chr22:45647144-45649656
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 246 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029835; NONHSAT087244
Alternative gene names: XLOC_014267; linc-ATXN10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3152 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN10-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN10-1:1
3.1 lnc-ATXN10-1:1
4.0 lnc-ATXN10-4:1
4.1 lnc-ATXN10-4:1
5.0 lnc-ATXN10-4:1
5.1 lnc-FBLN1-4:1
5.2 lnc-ATXN10-4:1