Transcript: lnc-ATXN7-17:6

Basic information

LNCipedia transcript ID: lnc-ATXN7-17:6 
LNCipedia gene ID: lnc-ATXN7-17
Location (hg38): chr3:64004022-64012241
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2549 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT090223; NR_038286
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7163 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN7-17:6 yes no no no

Available literature

  1. Wang (2017), Long non-coding RNA ENST00462717 suppresses the proliferation, survival, and migration by inhibiting MDM2/MAPK pathway in glioma., Biochem. Biophys. Res. Commun.
  2. Qiu (2016), Circulating Long Non-Coding RNAs Act as Biomarkers for Predicting 131I Uptake and Mortality in Papillary Thyroid Cancer Patients with Lung Metastases., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7-2:3
4.0 PSMD6-AS2:2
4.1 PSMD6-AS2:2
5.0 PSMD6-AS2:2
5.1 lnc-ATXN7-17:2
5.2 lnc-ATXN7-17:6