Transcript: lnc-ATXN7L3B-2:1

Basic information

LNCipedia transcript ID: lnc-ATXN7L3B-2:1 
LNCipedia gene ID: lnc-ATXN7L3B-2
Ensembl Gene ID: ENSG00000257587
Ensembl Transcript ID: ENST00000546770
Location (hg38): chr12:73906940-73919337
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546770; ENST00000546770.1; RP11-711C17.1-001; OTTHUMT00000405455.1; NONHSAT029492
Alternative gene names: ENSG00000257587; RP11-711C17.1; ENSG00000257587.1; OTTHUMG00000169688.1; AC136188.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -441.8174 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN7L3B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN7L3B-2:1
3.1 lnc-ATXN7L3B-2:1
4.0 lnc-ATXN7L3B-2:1
4.1 lnc-ATXN7L3B-2:1
5.0 lnc-ATXN7L3B-2:1
5.1 lnc-RAB3IP-23:1
5.2 lnc-ATXN7L3B-2:1