Transcript: lnc-AUH-2:13

Basic information

LNCipedia transcript ID: lnc-AUH-2:13 
LNCipedia gene ID: lnc-AUH-2
Ensembl Gene ID: ENSG00000237422
Ensembl Transcript ID: ENST00000457976
Location (hg38): chr9:91119138-91163087
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015847; ENST00000457976; ENST00000457976.1; RP11-305L7.3-001; OTTHUMT00000053026.1; NONHSAT133115
Alternative gene names: XLOC_007776; linc-DIRAS2-6; ENSG00000237422; RP11-305L7.3; ENSG00000237422.1; OTTHUMG00000020204.1; AL158071.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.8774 non-coding 
CPAT coding probability 17.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AUH-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AUH-1:1
3.1 lnc-AUH-1:1
4.0 lnc-AUH-1:1
4.1 lnc-AUH-2:13
5.0 lnc-AUH-2:13
5.1 lnc-SEMA4D-47:8
5.2 lnc-AUH-2:13