Transcript: lnc-AUH-3:1

Basic information

LNCipedia transcript ID: lnc-AUH-3:1 
LNCipedia gene ID: lnc-AUH-3
RefSeq ID: NR_033912
Location (hg38): chr9:91063294-91075132
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5249 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000510603; TCONS_00015568; NONHSAT133109; NR_033912; NR_033912.1
Alternative gene names: ENSG00000249954; XLOC_007774; linc-DIRAS2-5; LOC100129316


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.153 non-coding 
CPAT coding probability 16.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AUH-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AUH-3:1
3.1 lnc-AUH-3:1
4.0 lnc-AUH-3:1
4.1 lnc-AUH-3:1
5.0 lnc-AUH-3:1
5.1 lnc-SEMA4D-44:1
5.2 lnc-AUH-3:1