Transcript: lnc-AUNIP-2:10

Basic information

LNCipedia transcript ID: lnc-AUNIP-2:10 
LNCipedia gene ID: lnc-AUNIP-2
Ensembl Gene ID: ENSG00000228172
Ensembl Transcript ID: ENST00000442055
Location (hg38): chr1:25816749-25819772
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442055.1; RP1-317E23.3-001; OTTHUMT00000019317.1; NONHSAT001747; ENST00000442055.5
Alternative gene names: ENSG00000228172.1; RP1-317E23.3; OTTHUMG00000007376.1; ENSG00000228172.5; AL020996.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.3485 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AUNIP-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL020996.1-1:1
4.0 lnc-AL020996.1-1:1
4.1 lnc-AL020996.1-1:1
5.0 lnc-AL020996.1-1:1
5.1 lnc-CRYBG2-9:10
5.2 lnc-AUNIP-2:10