Transcript: lnc-AUNIP-2:2

Basic information

LNCipedia transcript ID: lnc-AUNIP-2:2 
LNCipedia gene ID: lnc-AUNIP-2
Ensembl Gene ID: ENSG00000228172
Ensembl Transcript ID: ENST00000536896
Location (hg38): chr1:25818491-25820797
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2307 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536896.2
Alternative gene names: ENSG00000228172.5; RP1-317E23.3; AL020996.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.5003 non-coding 
CPAT coding probability 32.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AUNIP-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL020996.1-1:6
4.1 lnc-AL020996.1-1:6
5.0 lnc-AL020996.1-1:6
5.1 lnc-CRYBG2-9:2
5.2 lnc-AUNIP-2:2