Transcript: lnc-AUTS2-2:1

Basic information

LNCipedia transcript ID: lnc-AUTS2-2:1 
LNCipedia gene ID: lnc-AUTS2-2
Ensembl Gene ID: ENSG00000233689
Ensembl Transcript ID: ENST00000447158
Location (hg38): chr7:69040152-69046803
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 419 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013020; ENST00000447158; ENST00000447158.1; RP11-123O1.1-001; OTTHUMT00000344771.1; NONHSAT121304
Alternative gene names: XLOC_006141; linc-AUTS2-2; ENSG00000233689; RP11-123O1.1; ENSG00000233689.1; OTTHUMG00000156611.1; AC104688.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6445 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AUTS2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AUTS2-2:1
3.1 lnc-AUTS2-2:1
4.0 lnc-AUTS2-2:1
4.1 lnc-AUTS2-2:1
5.0 lnc-AUTS2-2:1
5.1 lnc-TPST1-79:1
5.2 lnc-AUTS2-2:1