Transcript: lnc-AVEN-1:1

Basic information

LNCipedia transcript ID: lnc-AVEN-1:1 
LNCipedia gene ID: lnc-AVEN-1
Location (hg38): chr15:33858717-33864825
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000560268.1; RP11-3D4.2-001; OTTHUMT00000417957.1; NONHSAT041557
Alternative gene names: ENSG00000259287.1; RP11-3D4.2; OTTHUMG00000172338.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.4435 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AVEN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AVEN-1:1
4.0 lnc-AVEN-1:1
4.1 lnc-AVEN-1:1
5.0 lnc-AVEN-1:1
5.1 lnc-ZNF770-21:1
5.2 lnc-AVEN-1:1