Transcript: lnc-B3GALT5-1:6

Basic information

LNCipedia transcript ID: lnc-B3GALT5-1:6 
LNCipedia gene ID: lnc-B3GALT5-1
Location (hg38): chr21:39725895-39726948
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 375 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029023; NONHSAT082209
Alternative gene names: XLOC_013945; linc-IGSF5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0702 non-coding 
CPAT coding probability 10.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GALT5-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGSF5-2:1
3.1 lnc-B3GALT5-1:2
4.0 lnc-B3GALT5-1:2
4.1 lnc-IGSF5-1:8
5.0 lnc-IGSF5-1:8
5.1 lnc-SIM2-77:3
5.2 lnc-B3GALT5-1:6