Transcript: lnc-B3GAT1-1:1

Basic information

LNCipedia transcript ID: lnc-B3GAT1-1:1 
LNCipedia gene ID: lnc-B3GAT1-1
Ensembl Gene ID: ENSG00000254989
Ensembl Transcript ID: ENST00000529417
Location (hg38): chr11:134671426-134672024
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529417; ENST00000529417.1; RP11-469N6.3-001; OTTHUMT00000393645.1; NONHSAT025280
Alternative gene names: ENSG00000254989; RP11-469N6.3; ENSG00000254989.1; OTTHUMG00000167182.1; AP001999.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.8996 non-coding 
CPAT coding probability 3.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GAT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-B3GAT1-1:1
3.1 lnc-B3GAT1-1:1
4.0 lnc-B3GAT1-1:1
4.1 lnc-B3GAT1-1:1
5.0 lnc-B3GAT1-1:1
5.1 lnc-NCAPD3-8:1
5.2 lnc-B3GAT1-1:1